A simulated dataset generated using zinb_simdata() for demonstrating functions in the scGraphVerse package.
Usage
data(count_matrices)
Examples
data(count_matrices)
str(count_matrices)
#> List of 3
#> $ :Formal class 'SingleCellExperiment' [package "SingleCellExperiment"] with 9 slots
#> .. ..@ int_elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ rowPairs:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 3
#> .. .. .. .. ..$ reducedDims:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ altExps :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ colPairs :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_metadata :List of 1
#> .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
#> .. .. .. ..$ : int [1:3] 1 28 1
#> .. ..@ rowRanges :Formal class 'CompressedGRangesList' [package "GenomicRanges"] with 5 slots
#> .. .. .. ..@ unlistData :Formal class 'GRanges' [package "GenomicRanges"] with 7 slots
#> .. .. .. .. .. ..@ seqnames :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 0 levels:
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ ranges :Formal class 'IRanges' [package "IRanges"] with 6 slots
#> .. .. .. .. .. .. .. ..@ start : int(0)
#> .. .. .. .. .. .. .. ..@ width : int(0)
#> .. .. .. .. .. .. .. ..@ NAMES : NULL
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ strand :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 3 levels "+","-","*":
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ seqinfo :Formal class 'Seqinfo' [package "GenomeInfoDb"] with 4 slots
#> .. .. .. .. .. .. .. ..@ seqnames : chr(0)
#> .. .. .. .. .. .. .. ..@ seqlengths : int(0)
#> .. .. .. .. .. .. .. ..@ is_circular: logi(0)
#> .. .. .. .. .. .. .. ..@ genome : chr(0)
#> .. .. .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. .. ..@ nrows : int 0
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. ..@ elementType : chr "GRanges"
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ partitioning :Formal class 'PartitioningByEnd' [package "IRanges"] with 5 slots
#> .. .. .. .. .. ..@ end : int [1:35] 0 0 0 0 0 0 0 0 0 0 ...
#> .. .. .. .. .. ..@ NAMES : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ CELL_TYPE: chr [1:40] "T_cells" "T_cells" "T_cells" "T_cells" ...
#> .. ..@ assays :Formal class 'SimpleAssays' [package "SummarizedExperiment"] with 1 slot
#> .. .. .. ..@ data:Formal class 'SimpleList' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. ..@ listData :List of 1
#> .. .. .. .. .. .. ..$ counts: num [1:35, 1:40] 3 1 2 1 1 2 1 2 1 1 ...
#> .. .. .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. .. .. ..$ : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. .. .. .. ..$ : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ NAMES : NULL
#> .. ..@ elementMetadata :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData : Named list()
#> .. ..@ metadata : list()
#> $ :Formal class 'SingleCellExperiment' [package "SingleCellExperiment"] with 9 slots
#> .. ..@ int_elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ rowPairs:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 3
#> .. .. .. .. ..$ reducedDims:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ altExps :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ colPairs :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_metadata :List of 1
#> .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
#> .. .. .. ..$ : int [1:3] 1 28 1
#> .. ..@ rowRanges :Formal class 'CompressedGRangesList' [package "GenomicRanges"] with 5 slots
#> .. .. .. ..@ unlistData :Formal class 'GRanges' [package "GenomicRanges"] with 7 slots
#> .. .. .. .. .. ..@ seqnames :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 0 levels:
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ ranges :Formal class 'IRanges' [package "IRanges"] with 6 slots
#> .. .. .. .. .. .. .. ..@ start : int(0)
#> .. .. .. .. .. .. .. ..@ width : int(0)
#> .. .. .. .. .. .. .. ..@ NAMES : NULL
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ strand :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 3 levels "+","-","*":
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ seqinfo :Formal class 'Seqinfo' [package "GenomeInfoDb"] with 4 slots
#> .. .. .. .. .. .. .. ..@ seqnames : chr(0)
#> .. .. .. .. .. .. .. ..@ seqlengths : int(0)
#> .. .. .. .. .. .. .. ..@ is_circular: logi(0)
#> .. .. .. .. .. .. .. ..@ genome : chr(0)
#> .. .. .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. .. ..@ nrows : int 0
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. ..@ elementType : chr "GRanges"
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ partitioning :Formal class 'PartitioningByEnd' [package "IRanges"] with 5 slots
#> .. .. .. .. .. ..@ end : int [1:35] 0 0 0 0 0 0 0 0 0 0 ...
#> .. .. .. .. .. ..@ NAMES : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ CELL_TYPE: chr [1:40] "T_cells" "T_cells" "T_cells" "T_cells" ...
#> .. ..@ assays :Formal class 'SimpleAssays' [package "SummarizedExperiment"] with 1 slot
#> .. .. .. ..@ data:Formal class 'SimpleList' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. ..@ listData :List of 1
#> .. .. .. .. .. .. ..$ counts: num [1:35, 1:40] 10 0 3 1 0 1 7 2 3 5 ...
#> .. .. .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. .. .. ..$ : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. .. .. .. ..$ : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ NAMES : NULL
#> .. ..@ elementMetadata :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData : Named list()
#> .. ..@ metadata : list()
#> $ :Formal class 'SingleCellExperiment' [package "SingleCellExperiment"] with 9 slots
#> .. ..@ int_elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ rowPairs:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 3
#> .. .. .. .. ..$ reducedDims:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ altExps :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. ..$ colPairs :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. ..@ nrows : int 40
#> .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. ..@ listData : Named list()
#> .. ..@ int_metadata :List of 1
#> .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
#> .. .. .. ..$ : int [1:3] 1 28 1
#> .. ..@ rowRanges :Formal class 'CompressedGRangesList' [package "GenomicRanges"] with 5 slots
#> .. .. .. ..@ unlistData :Formal class 'GRanges' [package "GenomicRanges"] with 7 slots
#> .. .. .. .. .. ..@ seqnames :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 0 levels:
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ ranges :Formal class 'IRanges' [package "IRanges"] with 6 slots
#> .. .. .. .. .. .. .. ..@ start : int(0)
#> .. .. .. .. .. .. .. ..@ width : int(0)
#> .. .. .. .. .. .. .. ..@ NAMES : NULL
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ strand :Formal class 'Rle' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. .. .. ..@ values : Factor w/ 3 levels "+","-","*":
#> .. .. .. .. .. .. .. ..@ lengths : int(0)
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ seqinfo :Formal class 'Seqinfo' [package "GenomeInfoDb"] with 4 slots
#> .. .. .. .. .. .. .. ..@ seqnames : chr(0)
#> .. .. .. .. .. .. .. ..@ seqlengths : int(0)
#> .. .. .. .. .. .. .. ..@ is_circular: logi(0)
#> .. .. .. .. .. .. .. ..@ genome : chr(0)
#> .. .. .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. .. .. ..@ nrows : int 0
#> .. .. .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. ..@ elementMetadata:Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. .. .. ..@ rownames : NULL
#> .. .. .. .. .. ..@ nrows : int 35
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. .. .. .. .. ..@ listData : Named list()
#> .. .. .. ..@ elementType : chr "GRanges"
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ partitioning :Formal class 'PartitioningByEnd' [package "IRanges"] with 5 slots
#> .. .. .. .. .. ..@ end : int [1:35] 0 0 0 0 0 0 0 0 0 0 ...
#> .. .. .. .. .. ..@ NAMES : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ colData :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. ..@ nrows : int 40
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData :List of 1
#> .. .. .. .. ..$ CELL_TYPE: chr [1:40] "T_cells" "T_cells" "T_cells" "T_cells" ...
#> .. ..@ assays :Formal class 'SimpleAssays' [package "SummarizedExperiment"] with 1 slot
#> .. .. .. ..@ data:Formal class 'SimpleList' [package "S4Vectors"] with 4 slots
#> .. .. .. .. .. ..@ listData :List of 1
#> .. .. .. .. .. .. ..$ counts: num [1:35, 1:40] 16 2 5 1 0 3 1 2 1 1 ...
#> .. .. .. .. .. .. .. ..- attr(*, "dimnames")=List of 2
#> .. .. .. .. .. .. .. .. ..$ : chr [1:35] "ACTG1" "ARPC2" "ARPC3" "BTF3" ...
#> .. .. .. .. .. .. .. .. ..$ : chr [1:40] "cell_1" "cell_2" "cell_3" "cell_4" ...
#> .. .. .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. .. .. ..@ elementMetadata: NULL
#> .. .. .. .. .. ..@ metadata : list()
#> .. ..@ NAMES : NULL
#> .. ..@ elementMetadata :Formal class 'DFrame' [package "S4Vectors"] with 6 slots
#> .. .. .. ..@ rownames : NULL
#> .. .. .. ..@ nrows : int 35
#> .. .. .. ..@ elementType : chr "ANY"
#> .. .. .. ..@ elementMetadata: NULL
#> .. .. .. ..@ metadata : list()
#> .. .. .. ..@ listData : Named list()
#> .. ..@ metadata : list()